crystal_distance 実行例

help出力 crystal_distance.py --help


Lattice parameters: [5.62, 5.62, 5.62, 90.0, 90.0, 90.0]
Lattice vectors:
  ax: (      5.62,          0,          0) A
  ay: ( 2.546e-10,       5.62,          0) A
  az: ( 2.546e-10,          0,       5.62) A
Metric tensor:
  gij: (     31.58,  1.431e-09,  1.431e-09) A
       ( 1.431e-09,      31.58,   6.48e-20) A
       ( 1.431e-09,   6.48e-20,      31.58) A

Volume:        177.5 A^3

Unit cell volume:        177.5 A^3
Reciprocal lattice parameters: [0.17793594306049823, 0.17793594306049823, 0.17793594306049823, 90.00000000257246, 90.00000000516778, 90.00000000516778]
Reciprocal lattice vectors:
  Rax: (    0.1779,  -8.06e-12,  -8.06e-12) A^-1
  Ray: (         0,     0.1779,          0) A^-1
  Raz: (         0,          0,     0.1779) A^-1
Reciprocal lattice metric tensor:
  Rgij: (   0.03166, -1.422e-12, -1.422e-12) A^-1
        (-1.422e-12,    0.03166,  6.382e-23) A^-1
        (-1.422e-12,  6.382e-23,    0.03166) A^-1
Reciprocal unit cell volume:     0.005634 A^-3

nmax: 1 1 1

Interatomic distances:
  Cl1  (     0.5,        0,        0) - Na4  (     0.5,      0.5,        0) + ( 0, -1,  0): dis =       2.81 A
  Cl1  (     0.5,        0,        0) - Na3  (     0.5,        0,      0.5) + ( 0,  0, -1): dis =       2.81 A
  Cl1  (     0.5,        0,        0) - Na1  (       0,        0,        0) + ( 0,  0,  0): dis =       2.81 A
  Cl1  (     0.5,        0,        0) - Na3  (     0.5,        0,      0.5) + ( 0,  0,  0): dis =       2.81 A
  Cl1  (     0.5,        0,        0) - Na4  (     0.5,      0.5,        0) + ( 0,  0,  0): dis =       2.81 A
  Cl1  (     0.5,        0,        0) - Na1  (       0,        0,        0) + ( 1,  0,  0): dis =       2.81 A
  Cl2  (     0.5,      0.5,      0.5) - Na2  (       0,      0.5,      0.5) + ( 0,  0,  0): dis =       2.81 A
  Cl2  (     0.5,      0.5,      0.5) - Na3  (     0.5,        0,      0.5) + ( 0,  0,  0): dis =       2.81 A
  Cl2  (     0.5,      0.5,      0.5) - Na4  (     0.5,      0.5,        0) + ( 0,  0,  0): dis =       2.81 A
  Cl2  (     0.5,      0.5,      0.5) - Na4  (     0.5,      0.5,        0) + ( 0,  0,  1): dis =       2.81 A
  Cl2  (     0.5,      0.5,      0.5) - Na3  (     0.5,        0,      0.5) + ( 0,  1,  0): dis =       2.81 A
  Cl2  (     0.5,      0.5,      0.5) - Na2  (       0,      0.5,      0.5) + ( 1,  0,  0): dis =       2.81 A
  Cl3  (       0,        0,      0.5) - Na3  (     0.5,        0,      0.5) + (-1,  0,  0): dis =       2.81 A
  Cl3  (       0,        0,      0.5) - Na2  (       0,      0.5,      0.5) + ( 0, -1,  0): dis =       2.81 A
  Cl3  (       0,        0,      0.5) - Na1  (       0,        0,        0) + ( 0,  0,  0): dis =       2.81 A
  Cl3  (       0,        0,      0.5) - Na2  (       0,      0.5,      0.5) + ( 0,  0,  0): dis =       2.81 A
  Cl3  (       0,        0,      0.5) - Na3  (     0.5,        0,      0.5) + ( 0,  0,  0): dis =       2.81 A
  Cl3  (       0,        0,      0.5) - Na1  (       0,        0,        0) + ( 0,  0,  1): dis =       2.81 A
  Cl4  (       0,      0.5,        0) - Na4  (     0.5,      0.5,        0) + (-1,  0,  0): dis =       2.81 A
  Cl4  (       0,      0.5,        0) - Na2  (       0,      0.5,      0.5) + ( 0,  0, -1): dis =       2.81 A
  Cl4  (       0,      0.5,        0) - Na1  (       0,        0,        0) + ( 0,  0,  0): dis =       2.81 A
  Cl4  (       0,      0.5,        0) - Na2  (       0,      0.5,      0.5) + ( 0,  0,  0): dis =       2.81 A
  Cl4  (       0,      0.5,        0) - Na4  (     0.5,      0.5,        0) + ( 0,  0,  0): dis =       2.81 A
  Cl4  (       0,      0.5,        0) - Na1  (       0,        0,        0) + ( 0,  1,  0): dis =       2.81 A
  Na1  (       0,        0,        0) - Cl1  (     0.5,        0,        0) + (-1,  0,  0): dis =       2.81 A
  Na1  (       0,        0,        0) - Cl4  (       0,      0.5,        0) + ( 0, -1,  0): dis =       2.81 A
  Na1  (       0,        0,        0) - Cl3  (       0,        0,      0.5) + ( 0,  0, -1): dis =       2.81 A
  Na1  (       0,        0,        0) - Cl1  (     0.5,        0,        0) + ( 0,  0,  0): dis =       2.81 A
  Na1  (       0,        0,        0) - Cl3  (       0,        0,      0.5) + ( 0,  0,  0): dis =       2.81 A
  Na1  (       0,        0,        0) - Cl4  (       0,      0.5,        0) + ( 0,  0,  0): dis =       2.81 A
  Na2  (       0,      0.5,      0.5) - Cl2  (     0.5,      0.5,      0.5) + (-1,  0,  0): dis =       2.81 A
  Na2  (       0,      0.5,      0.5) - Cl2  (     0.5,      0.5,      0.5) + ( 0,  0,  0): dis =       2.81 A
  Na2  (       0,      0.5,      0.5) - Cl3  (       0,        0,      0.5) + ( 0,  0,  0): dis =       2.81 A
  Na2  (       0,      0.5,      0.5) - Cl4  (       0,      0.5,        0) + ( 0,  0,  0): dis =       2.81 A
  Na2  (       0,      0.5,      0.5) - Cl4  (       0,      0.5,        0) + ( 0,  0,  1): dis =       2.81 A
  Na2  (       0,      0.5,      0.5) - Cl3  (       0,        0,      0.5) + ( 0,  1,  0): dis =       2.81 A
  Na3  (     0.5,        0,      0.5) - Cl2  (     0.5,      0.5,      0.5) + ( 0, -1,  0): dis =       2.81 A
  Na3  (     0.5,        0,      0.5) - Cl1  (     0.5,        0,        0) + ( 0,  0,  0): dis =       2.81 A
  Na3  (     0.5,        0,      0.5) - Cl2  (     0.5,      0.5,      0.5) + ( 0,  0,  0): dis =       2.81 A
  Na3  (     0.5,        0,      0.5) - Cl3  (       0,        0,      0.5) + ( 0,  0,  0): dis =       2.81 A
  Na3  (     0.5,        0,      0.5) - Cl1  (     0.5,        0,        0) + ( 0,  0,  1): dis =       2.81 A
  Na3  (     0.5,        0,      0.5) - Cl3  (       0,        0,      0.5) + ( 1,  0,  0): dis =       2.81 A
  Na4  (     0.5,      0.5,        0) - Cl2  (     0.5,      0.5,      0.5) + ( 0,  0, -1): dis =       2.81 A
  Na4  (     0.5,      0.5,        0) - Cl1  (     0.5,        0,        0) + ( 0,  0,  0): dis =       2.81 A
  Na4  (     0.5,      0.5,        0) - Cl2  (     0.5,      0.5,      0.5) + ( 0,  0,  0): dis =       2.81 A
  Na4  (     0.5,      0.5,        0) - Cl4  (       0,      0.5,        0) + ( 0,  0,  0): dis =       2.81 A
  Na4  (     0.5,      0.5,        0) - Cl1  (     0.5,        0,        0) + ( 0,  1,  0): dis =       2.81 A
  Na4  (     0.5,      0.5,        0) - Cl4  (       0,      0.5,        0) + ( 1,  0,  0): dis =       2.81 A
  Cl1  (     0.5,        0,        0) - Cl3  (       0,        0,      0.5) + ( 0,  0,  0): dis =      3.974 A
  Cl1  (     0.5,        0,        0) - Cl4  (       0,      0.5,        0) + ( 0,  0,  0): dis =      3.974 A
  Cl1  (     0.5,        0,        0) - Cl4  (       0,      0.5,        0) + ( 1, -1,  0): dis =      3.974 A
  Cl1  (     0.5,        0,        0) - Cl3  (       0,        0,      0.5) + ( 1,  0, -1): dis =      3.974 A
  Cl2  (     0.5,      0.5,      0.5) - Cl4  (       0,      0.5,        0) + ( 0,  0,  1): dis =      3.974 A
  Cl2  (     0.5,      0.5,      0.5) - Cl3  (       0,        0,      0.5) + ( 0,  1,  0): dis =      3.974 A
  Cl2  (     0.5,      0.5,      0.5) - Cl3  (       0,        0,      0.5) + ( 1,  0,  0): dis =      3.974 A
  Cl2  (     0.5,      0.5,      0.5) - Cl4  (       0,      0.5,        0) + ( 1,  0,  0): dis =      3.974 A
  Cl3  (       0,        0,      0.5) - Cl2  (     0.5,      0.5,      0.5) + (-1,  0,  0): dis =      3.974 A
  Cl3  (       0,        0,      0.5) - Cl1  (     0.5,        0,        0) + (-1,  0,  1): dis =      3.974 A
  Cl3  (       0,        0,      0.5) - Cl2  (     0.5,      0.5,      0.5) + ( 0, -1,  0): dis =      3.974 A
  Cl3  (       0,        0,      0.5) - Cl1  (     0.5,        0,        0) + ( 0,  0,  0): dis =      3.974 A
  Cl4  (       0,      0.5,        0) - Cl2  (     0.5,      0.5,      0.5) + (-1,  0,  0): dis =      3.974 A
  Cl4  (       0,      0.5,        0) - Cl1  (     0.5,        0,        0) + (-1,  1,  0): dis =      3.974 A
  Cl4  (       0,      0.5,        0) - Cl2  (     0.5,      0.5,      0.5) + ( 0,  0, -1): dis =      3.974 A
  Cl4  (       0,      0.5,        0) - Cl1  (     0.5,        0,        0) + ( 0,  0,  0): dis =      3.974 A
  Na1  (       0,        0,        0) - Na3  (     0.5,        0,      0.5) + (-1,  0,  0): dis =      3.974 A
  Na1  (       0,        0,        0) - Na4  (     0.5,      0.5,        0) + (-1,  0,  0): dis =      3.974 A
  Na1  (       0,        0,        0) - Na4  (     0.5,      0.5,        0) + ( 0, -1,  0): dis =      3.974 A
  Na1  (       0,        0,        0) - Na3  (     0.5,        0,      0.5) + ( 0,  0, -1): dis =      3.974 A
  Na2  (       0,      0.5,      0.5) - Na4  (     0.5,      0.5,        0) + (-1,  0,  1): dis =      3.974 A
  Na2  (       0,      0.5,      0.5) - Na3  (     0.5,        0,      0.5) + (-1,  1,  0): dis =      3.974 A
  Na2  (       0,      0.5,      0.5) - Na3  (     0.5,        0,      0.5) + ( 0,  0,  0): dis =      3.974 A
  Na2  (       0,      0.5,      0.5) - Na4  (     0.5,      0.5,        0) + ( 0,  0,  0): dis =      3.974 A
  Na3  (     0.5,        0,      0.5) - Na2  (       0,      0.5,      0.5) + ( 0,  0,  0): dis =      3.974 A
  Na3  (     0.5,        0,      0.5) - Na1  (       0,        0,        0) + ( 0,  0,  1): dis =      3.974 A
  Na3  (     0.5,        0,      0.5) - Na2  (       0,      0.5,      0.5) + ( 1, -1,  0): dis =      3.974 A
  Na3  (     0.5,        0,      0.5) - Na1  (       0,        0,        0) + ( 1,  0,  0): dis =      3.974 A
  Na4  (     0.5,      0.5,        0) - Na2  (       0,      0.5,      0.5) + ( 0,  0,  0): dis =      3.974 A
  Na4  (     0.5,      0.5,        0) - Na1  (       0,        0,        0) + ( 0,  1,  0): dis =      3.974 A
  Na4  (     0.5,      0.5,        0) - Na2  (       0,      0.5,      0.5) + ( 1,  0, -1): dis =      3.974 A
  Na4  (     0.5,      0.5,        0) - Na1  (       0,        0,        0) + ( 1,  0,  0): dis =      3.974 A
  Cl1  (     0.5,        0,        0) - Cl2  (     0.5,      0.5,      0.5) + ( 0, -1, -1): dis =      3.974 A
  Cl1  (     0.5,        0,        0) - Cl2  (     0.5,      0.5,      0.5) + ( 0, -1,  0): dis =      3.974 A
  Cl1  (     0.5,        0,        0) - Cl2  (     0.5,      0.5,      0.5) + ( 0,  0, -1): dis =      3.974 A
  Cl1  (     0.5,        0,        0) - Cl2  (     0.5,      0.5,      0.5) + ( 0,  0,  0): dis =      3.974 A
  Cl2  (     0.5,      0.5,      0.5) - Cl1  (     0.5,        0,        0) + ( 0,  0,  0): dis =      3.974 A
  Cl2  (     0.5,      0.5,      0.5) - Cl1  (     0.5,        0,        0) + ( 0,  0,  1): dis =      3.974 A
  Cl2  (     0.5,      0.5,      0.5) - Cl1  (     0.5,        0,        0) + ( 0,  1,  0): dis =      3.974 A
  Cl2  (     0.5,      0.5,      0.5) - Cl1  (     0.5,        0,        0) + ( 0,  1,  1): dis =      3.974 A
  Cl3  (       0,        0,      0.5) - Cl4  (       0,      0.5,        0) + ( 0, -1,  0): dis =      3.974 A
  Cl3  (       0,        0,      0.5) - Cl4  (       0,      0.5,        0) + ( 0, -1,  1): dis =      3.974 A
  Cl3  (       0,        0,      0.5) - Cl4  (       0,      0.5,        0) + ( 0,  0,  0): dis =      3.974 A
  Cl3  (       0,        0,      0.5) - Cl4  (       0,      0.5,        0) + ( 0,  0,  1): dis =      3.974 A
  Cl4  (       0,      0.5,        0) - Cl3  (       0,        0,      0.5) + ( 0,  0, -1): dis =      3.974 A
  Cl4  (       0,      0.5,        0) - Cl3  (       0,        0,      0.5) + ( 0,  0,  0): dis =      3.974 A
  Cl4  (       0,      0.5,        0) - Cl3  (       0,        0,      0.5) + ( 0,  1, -1): dis =      3.974 A
  Cl4  (       0,      0.5,        0) - Cl3  (       0,        0,      0.5) + ( 0,  1,  0): dis =      3.974 A
  Na1  (       0,        0,        0) - Na2  (       0,      0.5,      0.5) + ( 0, -1, -1): dis =      3.974 A
  Na1  (       0,        0,        0) - Na2  (       0,      0.5,      0.5) + ( 0, -1,  0): dis =      3.974 A
  Na1  (       0,        0,        0) - Na2  (       0,      0.5,      0.5) + ( 0,  0, -1): dis =      3.974 A
  Na1  (       0,        0,        0) - Na2  (       0,      0.5,      0.5) + ( 0,  0,  0): dis =      3.974 A
  Na2  (       0,      0.5,      0.5) - Na1  (       0,        0,        0) + ( 0,  0,  0): dis =      3.974 A
  Na2  (       0,      0.5,      0.5) - Na1  (       0,        0,        0) + ( 0,  0,  1): dis =      3.974 A
  Na2  (       0,      0.5,      0.5) - Na1  (       0,        0,        0) + ( 0,  1,  0): dis =      3.974 A
  Na2  (       0,      0.5,      0.5) - Na1  (       0,        0,        0) + ( 0,  1,  1): dis =      3.974 A
  Na3  (     0.5,        0,      0.5) - Na4  (     0.5,      0.5,        0) + ( 0, -1,  0): dis =      3.974 A
  Na3  (     0.5,        0,      0.5) - Na4  (     0.5,      0.5,        0) + ( 0, -1,  1): dis =      3.974 A
  Na3  (     0.5,        0,      0.5) - Na4  (     0.5,      0.5,        0) + ( 0,  0,  0): dis =      3.974 A
  Na3  (     0.5,        0,      0.5) - Na4  (     0.5,      0.5,        0) + ( 0,  0,  1): dis =      3.974 A
  Na4  (     0.5,      0.5,        0) - Na3  (     0.5,        0,      0.5) + ( 0,  0, -1): dis =      3.974 A
  Na4  (     0.5,      0.5,        0) - Na3  (     0.5,        0,      0.5) + ( 0,  0,  0): dis =      3.974 A
  Na4  (     0.5,      0.5,        0) - Na3  (     0.5,        0,      0.5) + ( 0,  1, -1): dis =      3.974 A
  Na4  (     0.5,      0.5,        0) - Na3  (     0.5,        0,      0.5) + ( 0,  1,  0): dis =      3.974 A
  Cl1  (     0.5,        0,        0) - Cl4  (       0,      0.5,        0) + ( 0, -1,  0): dis =      3.974 A
  Cl1  (     0.5,        0,        0) - Cl3  (       0,        0,      0.5) + ( 0,  0, -1): dis =      3.974 A
  Cl1  (     0.5,        0,        0) - Cl3  (       0,        0,      0.5) + ( 1,  0,  0): dis =      3.974 A
  Cl1  (     0.5,        0,        0) - Cl4  (       0,      0.5,        0) + ( 1,  0,  0): dis =      3.974 A
  Cl2  (     0.5,      0.5,      0.5) - Cl3  (       0,        0,      0.5) + ( 0,  0,  0): dis =      3.974 A
  Cl2  (     0.5,      0.5,      0.5) - Cl4  (       0,      0.5,        0) + ( 0,  0,  0): dis =      3.974 A
  Cl2  (     0.5,      0.5,      0.5) - Cl4  (       0,      0.5,        0) + ( 1,  0,  1): dis =      3.974 A
  Cl2  (     0.5,      0.5,      0.5) - Cl3  (       0,        0,      0.5) + ( 1,  1,  0): dis =      3.974 A
  Cl3  (       0,        0,      0.5) - Cl2  (     0.5,      0.5,      0.5) + (-1, -1,  0): dis =      3.974 A
  Cl3  (       0,        0,      0.5) - Cl1  (     0.5,        0,        0) + (-1,  0,  0): dis =      3.974 A
  Cl3  (       0,        0,      0.5) - Cl2  (     0.5,      0.5,      0.5) + ( 0,  0,  0): dis =      3.974 A
  Cl3  (       0,        0,      0.5) - Cl1  (     0.5,        0,        0) + ( 0,  0,  1): dis =      3.974 A
  Cl4  (       0,      0.5,        0) - Cl2  (     0.5,      0.5,      0.5) + (-1,  0, -1): dis =      3.974 A
  Cl4  (       0,      0.5,        0) - Cl1  (     0.5,        0,        0) + (-1,  0,  0): dis =      3.974 A
  Cl4  (       0,      0.5,        0) - Cl2  (     0.5,      0.5,      0.5) + ( 0,  0,  0): dis =      3.974 A
  Cl4  (       0,      0.5,        0) - Cl1  (     0.5,        0,        0) + ( 0,  1,  0): dis =      3.974 A
  Na1  (       0,        0,        0) - Na4  (     0.5,      0.5,        0) + (-1, -1,  0): dis =      3.974 A
  Na1  (       0,        0,        0) - Na3  (     0.5,        0,      0.5) + (-1,  0, -1): dis =      3.974 A
  Na1  (       0,        0,        0) - Na3  (     0.5,        0,      0.5) + ( 0,  0,  0): dis =      3.974 A
  Na1  (       0,        0,        0) - Na4  (     0.5,      0.5,        0) + ( 0,  0,  0): dis =      3.974 A
  Na2  (       0,      0.5,      0.5) - Na3  (     0.5,        0,      0.5) + (-1,  0,  0): dis =      3.974 A
  Na2  (       0,      0.5,      0.5) - Na4  (     0.5,      0.5,        0) + (-1,  0,  0): dis =      3.974 A
  Na2  (       0,      0.5,      0.5) - Na4  (     0.5,      0.5,        0) + ( 0,  0,  1): dis =      3.974 A
  Na2  (       0,      0.5,      0.5) - Na3  (     0.5,        0,      0.5) + ( 0,  1,  0): dis =      3.974 A
  Na3  (     0.5,        0,      0.5) - Na2  (       0,      0.5,      0.5) + ( 0, -1,  0): dis =      3.974 A
  Na3  (     0.5,        0,      0.5) - Na1  (       0,        0,        0) + ( 0,  0,  0): dis =      3.974 A
  Na3  (     0.5,        0,      0.5) - Na2  (       0,      0.5,      0.5) + ( 1,  0,  0): dis =      3.974 A
  Na3  (     0.5,        0,      0.5) - Na1  (       0,        0,        0) + ( 1,  0,  1): dis =      3.974 A
  Na4  (     0.5,      0.5,        0) - Na2  (       0,      0.5,      0.5) + ( 0,  0, -1): dis =      3.974 A
  Na4  (     0.5,      0.5,        0) - Na1  (       0,        0,        0) + ( 0,  0,  0): dis =      3.974 A
  Na4  (     0.5,      0.5,        0) - Na2  (       0,      0.5,      0.5) + ( 1,  0,  0): dis =      3.974 A
  Na4  (     0.5,      0.5,        0) - Na1  (       0,        0,        0) + ( 1,  1,  0): dis =      3.974 A



生成されたデータファイル

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生成された画像一覧

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