Information in tkutils.set_exception(): Set excption handler sys.excepthook #======================================================== # Fitting to decay data #======================================================== Check infile parameter: Input file [D:/git/tkProg/tkprog_COE/optimize/optimize_decay/test/decay.xlsx] is given. Paramter file is set to [D:\git\tkProg\tkprog_COE\optimize\optimize_decay\test\decay.in]. Update paparametersramers from command line arguments Read configration file [D:\git\tkProg\tkprog_COE\optimize\optimize_decay\test\decay.in] Read parameters from [D:\git\tkProg\tkprog_COE\optimize\optimize_decay\test\decay.in] alpha: 0 converted_file: cv: daemon: 0 datafile: decay-cal.xlsx dx: 1e-05 ffitfiles: 0 fhistory: 1 figsize: [8, 6] file1: sim file2: file3: file4: file5: fitfile: decay-fit.xlsx fitfile_template: {filebody}_parameters.csv fmax_plot: 10 fmax_record: 2000 fmin_max_mlr: 60 fontsize: 16 fplot: 1 ga_nmaxiter: 3 graphupdateinterval: 10 help: 0 hidden_layer_sizes: 3,3,3 historyfile: D:\git\tkProg\tkprog_COE\optimize\optimize_decay\test\decay-history.xlsx infile: D:/git/tkProg/tkprog_COE/optimize/optimize_decay/test/decay.xlsx initialize_method: simplex input_template: interval: 50 ix_plot: ix_sort: jac: 3-points kvariance: 6 l1_ratio: 0.5 legend_fontsize: 12 logfile: D:\git\tkProg\tkprog_COE\optimize\optimize_decay\test\decay-out.txt max_iter_mlp: 1000 max_num_probes: 1 method: nelder-mead mode: fit mutation_rate: 0.01 n_restarts_optimizer: 50 ncal_error: 11 nLSQ_tau: 7 nmax_surrogate_trial: 5 nmaxcall: 10000 nmaxdata: 20 nmaxiter: 1000 nohup: 0 nparents: 5 nsample: 100 ntau: 3 num_rand_basis: 400 nx: 5 nx_skip: 0 outfile: input-repeat.xlsx parameterfile: D:\git\tkProg\tkprog_COE\optimize\optimize_decay\test\decay.in plot_interval: 5 print_interval: 5 run: 1 sample: score_mode: EI seed: surrogate_method: cg surrogate_model: gpr surrogate_scores: max target_var: 0 test_data_ratio: 0.2 tol: 1e-08 trainfile: fit_db.xlsx use_cv: 0 use_tkplt: 0 wx: 1/x x0: x1: x_scale: xatol: 1e-15 xlabel: t xlsm_template: StandardGraph.xlsm xmax: 1e+100 xmin: -1e+100 y_scale: log ylabel: I infile: D:/git/tkProg/tkprog_COE/optimize/optimize_decay/test/decay.xlsx parameterfile: D:\git\tkProg\tkprog_COE\optimize\optimize_decay\test\decay.in stop file: D:\git\tkProg\tkprog_COE\optimize\optimize_decay\test\stop Simulation In tkminimize_func.read_parameters(): Read parameters from [D:\git\tkProg\tkprog_COE\optimize\optimize_decay\test\decay.in] mode : sim fplot : 1 fhistory : 1 ffitfiles : 0 stop path : D:\git\tkProg\tkprog_COE\optimize\optimize_decay\test\stop infile : D:/git/tkProg/tkprog_COE/optimize/optimize_decay/test/decay.xlsx outfile : input-repeat.xlsx config parameter file : D:\git\tkProg\tkprog_COE\optimize\optimize_decay\test\decay.in fitting parameter file: D:\git\tkProg\tkprog_COE\optimize\optimize_decay\test\decay_parameters.csv history file : D:\git\tkProg\tkprog_COE\optimize\optimize_decay\test\decay-history.xlsx Fitting configuration method : nelder-mead jac : 3-points tol : 1e-08 nmaxiter: 1000 nmaxcall: 10000 y_scale : log Fitting parameters red from [D:\git\tkProg\tkprog_COE\optimize\optimize_decay\test\decay_parameters.csv]: 00: bg_c0= 1.02265e-08 (id=1) (linear=1) penality: 1 * (0 - 5.2036e-07) 01: I01= 3.06353e-07 (id=1) (linear=1) penality: 1 * (0 - 5.2036e-06) 02: tau1= 0.430006 (id=1) (linear=0) penality: 1 * (1.66667e-06 - 1000) 03: I02= 1.66437e-08 (id=1) (linear=1) penality: 1 * (0 - 5.2036e-06) 04: tau2= 4.22784 (id=1) (linear=0) penality: 1 * (1.66667e-06 - 1000) 05: I03= 8.99243e-08 (id=1) (linear=1) penality: 1 * (0 - 5.2036e-06) 06: tau3= 9.54715 (id=1) (linear=0) penality: 1 * (1.66667e-06 - 1000) 07: I04= 4.26889e-08 (id=1) (linear=1) penality: 1 * (0 - 5.2036e-06) 08: tau4= 59.0894 (id=1) (linear=0) penality: 1 * (1.66667e-06 - 1000) 09: I05= 5.31142e-08 (id=1) (linear=1) penality: 1 * (0 - 5.2036e-06) 10: tau5= 247.568 (id=1) (linear=0) penality: 1 * (1.66667e-06 - 1000) Read input data from [D:/git/tkProg/tkprog_COE/optimize/optimize_decay/test/decay.xlsx] minimize_func.read_input_data(): Read input data from [D:/git/tkProg/tkprog_COE/optimize/optimize_decay/test/decay.xlsx] Save input data repeat to [input-repeat.xlsx] tkVariousData.to_excel(): Use Excel template [D:\git\tkProg\tkprog_COE\excel\template\StandardGraph.xlsm] to save to [input-repeat.xlsx] Warning in tkVariousData.to_excel(): .xlsm template is given but the output file is not .xlsm. Change output file path to [input-repeat.xlsm] Save to [D:\git\tkProg\tkprog_COE\optimize\optimize_decay\test\input-repeat.xlsm] Parameters: 00: bg_c0= 1.02265e-08 (id=1) (linear=1) penality: 1 * (0 - 5.2036e-07) 01: I01= 3.06353e-07 (id=1) (linear=1) penality: 1 * (0 - 5.2036e-06) 02: tau1= 0.430006 (id=1) (linear=0) penality: 1 * (1.66667e-06 - 1000) 03: I02= 1.66437e-08 (id=1) (linear=1) penality: 1 * (0 - 5.2036e-06) 04: tau2= 4.22784 (id=1) (linear=0) penality: 1 * (1.66667e-06 - 1000) 05: I03= 8.99243e-08 (id=1) (linear=1) penality: 1 * (0 - 5.2036e-06) 06: tau3= 9.54715 (id=1) (linear=0) penality: 1 * (1.66667e-06 - 1000) 07: I04= 4.26889e-08 (id=1) (linear=1) penality: 1 * (0 - 5.2036e-06) 08: tau4= 59.0894 (id=1) (linear=0) penality: 1 * (1.66667e-06 - 1000) 09: I05= 5.31142e-08 (id=1) (linear=1) penality: 1 * (0 - 5.2036e-06) 10: tau5= 247.568 (id=1) (linear=0) penality: 1 * (1.66667e-06 - 1000) tkFit_mxy_flex.save_history(): Add fmin and parameters to [D:\git\tkProg\tkprog_COE\optimize\optimize_decay\test\decay-history.xlsx] DB #1192: fmin= 0.01672 xdiff= 0 1.02265e-08 3.06353e-07 0.430006 1.66437e-08 4.22784 8.99243e-08 9.54715 4.26889e-08 59.0894 5.31142e-08 247.568 Simulated data: t I ini 0 5.204e-07 5.19e-07 30 8.847e-08 8.687e-08 60 6.666e-08 6.754e-08 90 5.512e-08 5.647e-08 120 4.756e-08 4.854e-08 150 4.205e-08 4.258e-08 180 3.785e-08 3.793e-08 210 3.437e-08 3.419e-08 240 3.148e-08 3.111e-08 270 2.902e-08 2.852e-08 300 2.685e-08 2.63e-08 330 2.495e-08 2.439e-08 360 2.325e-08 2.273e-08 390 2.172e-08 2.128e-08 420 2.033e-08 2e-08 450 1.908e-08 1.887e-08 480 1.789e-08 1.788e-08 510 1.684e-08 1.7e-08 540 1.584e-08 1.623e-08 570 1.493e-08 1.554e-08 600 1.402e-08 1.493e-08 Save input and initial data to [decay-fit.xlsx] tkVariousData.to_excel(): Use Excel template [D:\git\tkProg\tkprog_COE\excel\template\StandardGraph.xlsm] to save to [decay-fit.xlsx] Warning in tkVariousData.to_excel(): .xlsm template is given but the output file is not .xlsm. Change output file path to [decay-fit.xlsm] Save to [D:\git\tkProg\tkprog_COE\optimize\optimize_decay\test\decay-fit.xlsm] plot time at startup:25/06/21 21:34:17 time at end:25/06/21 21:34:18 Elapsed time from startup to end: 0.842079 sec