#===============================================
# TkPES
#===============================================
package TkPES;
use clib::TkFittingCommon2;
@ISA = qw(TkFittingCommon2);

#公開したいサブルーチン
#@EXPORT = qw(DelSpace Reduce01 MakePath RegExpQuote);

use strict;

use Utils;
use IniFile;
use CSV;

use MyTk::GraphFrameArray;
use MyTk::MyDragDrop;
use GraphData;

use Sci::Science;
use Sci::PES;
use Sci::Ellipsometry;
use Sci::Optimize;

#============================================================
#　変数等取得関数
#============================================================

#============================================================
#　コンストラクタ、デストラクタ
#============================================================
#呼び出されることはない
sub new
{
	my ($module, $app) = @_;
	my $this = {};
	bless $this;

	return $this;
}

sub DESTROY
{
	my $this = shift;
	$this->SUPER::DESTROY(@_);
}

#============================================================
#　継承クラスで定義しなおす関数
#============================================================
sub CreateLeftFrame
{
	my ($this, $ConfigSide, @args) = @_;
#	return $this->SUPER::CreateLeftFrame();
	return undef;
}

sub CreateSelectFilePane
{
	my ($this) = @_;
#	return $this->SUPER::CreateSelectFilePane();
	return undef;
}

sub CreateFileContentPane
{
	return undef;
}

sub CreateWidgets
{
	my ($this, $DoSuperOnly) = @_;
	$DoSuperOnly = 0 if(!defined $DoSuperOnly);
	my $mw     = $this->mw();
	my $ProgramName = "PES2008";

	$this->{ini}  = new IniFile(undef, 0, 0);
	$this->{dini} = new IniFile(undef, 0, 0);
	$this->{ini}->{nStepBG} = 2;
	$this->{ini}->{nGL}     = 6;
#	$this->{DataFile} = new Ellipsometry;
	$this->InitializeParameters($this->{ini}, $this->{dini});

	$this->SUPER::CreateWidgets();
	return if($DoSuperOnly);

	$mw->SetTitle("$ProgramName / TkPlot");
	$this->App()->SetProgram("$ProgramName / TkPlot");

#===================================================
# ペインを作製
#===================================================
	my $EntryWidth = $this->{EntryWidth} = 12;

	$mw->{NoteBook} = $this->MakeNotebookPanes($mw, $EntryWidth,
			$this->{ini}->pVariable("nFilmLayers", 1),
			$this->{ini}->pVariable("nLorentz",    3),
			$this->{ini}->pVariable("nDrude",      0),
			$this->{ini}->pVariable("nStepBG",     2),
			$this->{ini}->pVariable("nGL",         6),
			[qw(Main ViewRange LSQ GaussLorentz Setup GraphFrame)],
			[qw(nPESStepBG nGaussLorentz)],
		);
	$mw->{NoteBook}->pack(-fill => 'both', -expand => 'yes');

	$this->UpdateParameters();

#ツールバーのOpenボタンをファイル読み込みにバインドする
	my $Samplefmask = '*.csv;*.spe;*.jel;*.asp;*.smo;*isa;*.ref;*.pal;*.bef;*.aft;*.txt';
	$mw->{OpenButton}->configure(
			-command  => sub { 
					$this->{SampleCSV} = $this->ChooseFile("open", $Samplefmask, "ChooseSampleFile", 
														"SampleCSV", $this->{SampleFileFrame});
				},
		) if($mw->{OpenButton});

	my $DragDrop = new MyDragDrop();
	$DragDrop->ConfigureDrop(
				$this->mw(),
				[
					"\\.prm\$",  $this->{ParamFileEntry}, 
								sub { $this->ReadParameterFile($_[0]); },
				],
				[
					".*",     $this->{Sample1CSVFileEntry},   
								sub { 
									$this->{Sample1CSVFileEntry}->SetText($_[0]);
									$this->ReadSampleDataFile($_[0], 1, 1); 
								},
				],
			);
}

sub BuildMainPane
{
	my ($this, $MainPaneFrame, $EntryWidth) = @_;

	my $Frame = $MainPaneFrame->MyFrame()->pack(-anchor => 'nw', -fill => 'x');
	my $savefmask = '*.prm';
	$this->{ParameterFileFrame} = $this->MakeChooseFileEntry(
				$Frame, 'Param', 'Param:', $this->{ini}->pVariable("ParameterFile", ""), 
				'&Choose', sub {
					$this->ChooseFile("save", $savefmask, "ChooseParameterFile", @_); 
				},
			1,         sub { $this->SaveParameterFile("SaveParam", '', @_); },
			1,         sub { $this->EditFile('EditParam', @_); },
			[]
			);
	$this->{ParameterFileFrame}->pack(-anchor => 'nw', -fill => 'x');

	$Frame = $MainPaneFrame->MyFrame()->pack(-anchor => 'nw', -fill => 'x');
	my $Samplefmask = '*.csv;*.spe;*.jel;*.asp;*.smo;*isa;*.ref;*.pal;*.bef;*.aft;*.txt';
	$this->{SampleFileFrame} = $this->MakeChooseFileEntry(
				$Frame, 'SampleCSV', 'Sample:', $this->{ini}->pVariable("SampleCSVFile", ""), 
				'&Choose', sub {
						$this->{SampleCSV} = $this->ChooseFile("open", $Samplefmask, "ChooseSampleFile", @_);
						$this->AssignGraphData();
						$this->Draw();
					},
				0,         sub {},
				1,         sub { $this->EditFile('EditSampleCSV', @_); },
				['X1', 'Y1']
				);
	$this->{SampleFileFrame}->pack(-anchor => 'nw', -fill => 'x');
	$this->{SampleFileFrame}->{pXDataLabel} = ['.*E.*', '.*eV.*'];
	$this->{SampleFileFrame}->{pYDataLabel} = ['.*signal.*', 'I.*', '.*'];

	$Frame = $MainPaneFrame->MyFrame()->pack(-anchor => 'nw', -fill => 'x');
	$this->mw()->{LSQFrame2} = $this->MakeLSQPanes(
				$Frame, $EntryWidth,
				'Fitting',
				[qw(FittingRange)],
				[],
				[],
				['FitXMin', 'Emin:', 'FitXMax', 'Emax:', 'nSkipData', 'nSkip:'],
				['EPS', 'EPS:', 'nMaxIter', 'MaxIter:', 'nSaveSpectraInterval', 'SaveIntvl:'], 
			);
	$this->mw()->{LSQFrame2}->pack(-anchor => 'nw', -expand => 'yes', -fill => 'x');

	$Frame = $MainPaneFrame->MyLabFrame(
		-label     => 'Model',
			-labelside => 'acrosstop',
			)->pack(-anchor => 'nw');

	my $lsb5 = $this->{ChooseAppFunctionListBox} = $Frame->MyBrowseEntry(
			-variable   => $this->{ini}->pVariable('AppFunction', 'Gauss'),
			-label      => "App Function:",
			-state      => "readonly",
			-takefocus  => 1,
			-width      => 8,
			-Selections => ['Gauss', 'Lorentz'],
			-SelIndex   => 0,
		)->pack(-side => 'left', -expand => 'yes', -fill => 'x');
	$lsb5->configure(-browsecmd  => sub { $this->SelChangeListBox("AppFunction", $this->{ChooseAppFunctionListBox}); });

	my $lsb6 = $this->{ChooseConductionTypeListBox} = $Frame->MyBrowseEntry(
			-variable   => $this->{ini}->pVariable('ConductionType', 'Metal'),
			-label      => "Conduction Type:",
			-state      => "readonly",
			-takefocus  => 1,
			-width      => 10,
			-Selections => ['Metal', 'Semiconductor'],
			-SelIndex   => 0,
		)->pack(-side => 'left', -expand => 'yes', -fill => 'x');
	$lsb6->configure(-browsecmd  => sub { $this->SelChangeListBox("ConductionType", $this->{ChooseConductionTypeListBox}); });

	$Frame = $MainPaneFrame->MyLabFrame(
			-label     => 'Fermi-Dirac distribution',
			-labelside => 'acrosstop',
			)->pack(-anchor => 'nw');
	$this->MakeCheckEntry($Frame, "EF", "EF:", $this->{dini}->pVariable('EFcheck', 0),
			$this->{ini}->pVariable('EF', 0.0), "%g", $EntryWidth, "eV", 0, 0);
	$this->MakeCheckEntry($Frame, "T", "T:", $this->{dini}->pVariable('Tcheck', 0),
			$this->{ini}->pVariable('T', 300.0), "%g", $EntryWidth, "K", 0, 1);
	$this->MakeCheckEntry($Frame, "Wa", "Wa:", $this->{dini}->pVariable('Wacheck', 1),
			$this->{ini}->pVariable('Wa', 0.1), "%g", $EntryWidth, "eV", 0, 2);

	$Frame = $MainPaneFrame->MyLabFrame(
			-label     => 'Constant / Step BGs',
			-labelside => 'acrosstop',
			)->pack(-anchor => 'nw');
	$this->MakeCheckEntry($Frame, "BG", "BG:", $this->{dini}->pVariable('BGcheck', 0),
			$this->{ini}->pVariable('BG', 0.0), "%g", $EntryWidth, "", 0, 0);
	for(my $i = 0 ; $i < $this->{ini}->{nStepBG} ; $i++) {
		$this->MakeCheckEntry($Frame, "EBG0$i", "E0:", $this->{dini}->pVariable("EBG0${i}check", 0),
				$this->{ini}->pVariable("EBG0$i", 0.0),   "%g", $EntryWidth, "eV", $i+1, 0);
		$this->MakeCheckEntry($Frame, "BGLeft$i", "Left:", $this->{dini}->pVariable("BGLeft${i}check", 0),
				$this->{ini}->pVariable("BGLeft$i", 0.0), "%g", $EntryWidth, "",   $i+1, 1);
		$this->MakeCheckEntry($Frame, "WBG$i", "W:", $this->{dini}->pVariable("WBG${i}check", 0),
				$this->{ini}->pVariable("WBG$i", 0.3),    "%g", $EntryWidth, "eV", $i+1, 2);
	}

	$Frame = $MainPaneFrame->MyLabFrame(
			-label     => 'Conduction / Valnce bands, Cut off, Secondary electron exponent',
			-labelside => 'acrosstop',
			)->pack(-anchor => 'nw');
	$this->MakeCheckEntry($Frame, "ECBM", "ECBM:", $this->{dini}->pVariable('ECBMcheck', 0),
			$this->{ini}->pVariable('ECBM', 0.0), "%g", $EntryWidth, "eV", 0, 0);
	$this->MakeCheckEntry($Frame, "D0CB", "D0:", $this->{dini}->pVariable('D0CBcheck', 0),
			$this->{ini}->pVariable('D0CB', 0.0), "%g", $EntryWidth, "", 0, 1);
	$this->MakeCheckEntry($Frame, "EVBM", "EVBM:", $this->{dini}->pVariable('EVBMcheck', 0),
			$this->{ini}->pVariable('EVBM', 0.0), "%g", $EntryWidth, "eV", 1, 0);
	$this->MakeCheckEntry($Frame, "D0VB", "D0:", $this->{dini}->pVariable('D0VBcheck', 0),
			$this->{ini}->pVariable('D0VB', 0.0), "%g", $EntryWidth, "", 1, 1);
	$this->MakeCheckEntry($Frame, "Ecut", "Ecut:", $this->{dini}->pVariable('Ecutcheck', 0),
			$this->{ini}->pVariable('Ecut', 0.0), "%g", $EntryWidth, "eV", 2, 0);
	$this->MakeCheckEntry($Frame, "K0Ecut", "K0:", $this->{dini}->pVariable('K0Ecutcheck', 0),
			$this->{ini}->pVariable('K0Ecut', 0.0), "%g", $EntryWidth, "", 2, 1);
	$this->MakeCheckEntry($Frame, "BGcut", "BG:", $this->{dini}->pVariable('BGcutcheck', 0),
			$this->{ini}->pVariable('BGcut', 0.0), "%g", $EntryWidth, "", 2, 2);
	$this->MakeCheckEntry($Frame, "C0Exp", "C0:", $this->{dini}->pVariable('C0Expcheck', 0),
			$this->{ini}->pVariable('C0Exp', 0.0), "%g", $EntryWidth, "", 3, 0);
	$this->MakeCheckEntry($Frame, "WExp", "W:", $this->{dini}->pVariable('WExpcheck', 0),
			$this->{ini}->pVariable('WExp', 1.0), "%g", $EntryWidth, "eV", 3, 1);
	$this->MakeCheckEntry($Frame, "BetaExp", "beta:", $this->{dini}->pVariable('BetaExpcheck', 0),
			$this->{ini}->pVariable('BetaExp', 1.0), "%g", $EntryWidth, "", 3, 2);

#	$Frame = $MainPaneFrame->MyFrame()->pack(-anchor => 'nw', -fill => 'x');
	$Frame = $MainPaneFrame->MyLabFrame(
			-label     => 'Gauss-Lorentz functions',
			-labelside => 'acrosstop',
			)->pack(-side => 'top', -fill => 'x');
	for(my $i = 0 ; $i < $this->{ini}->{nGL} ; $i++) {
		$this->MakeCheckEntry($Frame, "GLE0$i", "E0:", $this->{dini}->pVariable("GLE0${i}check", 0),
				$this->{ini}->pVariable("GLE0$i", 0.0),   "%g", $EntryWidth, "eV", 2*$i, 0);
		$this->MakeCheckEntry($Frame, "GLC0$i", "C0:", $this->{dini}->pVariable("GLC0${i}check", 0),
				$this->{ini}->pVariable("GLC0$i", 0.0), "%g", $EntryWidth, "",   2*$i, 1);
		$this->MakeCheckEntry($Frame, "GLWL$i", "WL:", $this->{dini}->pVariable("GLWL${i}check", 0),
				$this->{ini}->pVariable("GLWL$i", 0.3),    "%g", $EntryWidth, "", 2*$i, 2);
		$this->MakeCheckEntry($Frame, "GLGFraction$i", "GaussF:", $this->{dini}->pVariable("GLGFraction${i}check", 0),
				$this->{ini}->pVariable("GLGFraction$i", 1.0), "%g", $EntryWidth, "",   2*$i+1, 1);
		$this->MakeCheckEntry($Frame, "GLGWRatio$i", "WRatio:", $this->{dini}->pVariable("GLGWRatio${i}check", 0),
				$this->{ini}->pVariable("GLGWRatio$i", 1.0),    "%g", $EntryWidth, "", 2*$i+1, 2);
	}

	$this->BuildFooter($MainPaneFrame, $EntryWidth);

	$this->UpdateParameters();
}

sub BuildLSQPane
{
	my ($this, $MainPaneFrame, $EntryWidth) = @_;

	my $Frame = $MainPaneFrame->MyFrame()->pack(-anchor => 'nw', -fill => 'x');
	$this->mw()->{LSQFrame} = $this->MakeLSQPanes(
				$Frame, $EntryWidth,
				'Fitting',
				[qw(LSQMethod FittingRange FittingConditions)],
#				[qw(LSQMethod FitTo FittingRange FittingConditions)],
				['Amoeba::Simplex', 'PDL::Simplex', 'ModifiedNewton'],
				['PES'],
				['FitXMin', 'Emin:', 'FitXMax', 'Emax:', 'nSkipData', 'nSkip:'],
				['EPS', 'EPS:', 'nMaxIter', 'MaxIter:', 'nSaveSpectraInterval', 'SaveIntvl:'], 
			);
	$this->mw()->{LSQFrame}->pack(-anchor => 'nw', -expand => 'yes', -fill => 'x');
#	$this->mw()->{LSQFrame}->{FitToListBox}->SetText('alpha');

	$this->BuildFooter($MainPaneFrame, $EntryWidth);
}

sub BuildViewRangePane
{
	my ($this, $MainFrame, $EntryWidth) = @_;

	$this->SUPER::BuildViewRangePane($MainFrame, $EntryWidth,
				[
					['x'], ['x']
				],
				[
					['x'], ['x']
				]
			);
	if($this->mw()->{NoteBook}->{ViewRangePaneFrame}->{GraphFrame1ViewY0Button}) {
		$this->mw()->{NoteBook}->{ViewRangePaneFrame}->{GraphFrame1ViewY0Button}->Select();
		$this->mw()->{NoteBook}->{ViewRangePaneFrame}->{GraphFrame1ViewY0Entry}->SetText(0.0);
	}

	$this->BuildFooter($MainFrame, $EntryWidth);
}

sub BuildFooter
{
	my ($this, $MainFrame, $EntryWidth) = @_;

	my $Frame1 = $MainFrame->MyFrame()->pack(-anchor => 'nw', -fill => 'x');
	my $ButtonFrame = $this->MakeFittingButtons($Frame1, ("RePlot", "RestoreScale", "Re&calc", "&Fit", "Flip X", "&Save"));
	$ButtonFrame->pack(-anchor => 'nw', -expand => 'yes', -fill => 'x');

	my $Frame = $MainFrame->MyFrame()->pack(-anchor => 'nw', -fill => 'x');
	$this->{ChooseExcitatioListBox} = $ButtonFrame->MyBrowseEntry(
			-label      => "Excitation:",
			-state      => "readonly",
			-takefocus  => 1,
			-width      => 15,
			-Selections => ["He I(21.2eV)", "He IIalpha(40.80eV)", "He IIbeta(48.36eV)", 
							"Ne I(16.7eV)", "Ne II(26.9eV)",       "Al Ka(1486.6eV)",     "Mg Ka(1253.6eV)",
							"HX-PES(BL47XU, 7935.2eV)", "HX-PES(BL15XU, 5950.2eV)"],
			-SelIndex   => 0,
		)->pack(-side => 'left');
}

#===================================================
# データ処理
#===================================================
sub FlipX
{
	my ($this, $FlipRange) = @_;
	$FlipRange = 1 if(!defined $FlipRange);
	my $App    = $this->App();
	my $optics = new Optics;
	my $ini    = $this->{ini};
	return if(!defined $this->{DataFile});
#print "FlipX\n";

	my $X1Label = $this->{SampleFileFrame}->{X1ListBox}->GetText();
	my $Y1Label = $this->{SampleFileFrame}->{Y1ListBox}->GetText();

	my $pX    = $this->{DataFile}->GetData($X1Label) if($X1Label);
#	my $pY1   = $this->{DataFile}->GetData($Y1Label) if($Y1Label);
	my $nData = $this->{DataFile}->nData();
	for(my $i = 0 ; $i < $nData  ; $i++) {
		$pX->[$i] = -$pX->[$i];
	}
	($ini->{FitXMin}, $ini->{FitXMax}) = (-$ini->{FitXMax}, -$ini->{FitXMin}) if($FlipRange);

	if(!$this->{ini}->{FlipX}) {
		$this->{ini}->{FlipX} = 1;
	}
	else {
		$this->{ini}->{FlipX} = 0;
	}

	$this->RePlot();
}

sub BuildOptimize
{
	my ($this, $IsPrint) = @_;
	$IsPrint = 1 if(!defined $IsPrint);

	my $ini    = $this->{ini};
	my $dini   = $this->{dini};

	my $optimize = $this->{Optimize} = new Optimize;;
	$optimize->AddParameters(
			"EF",  \$ini->{EF},
							$dini->{EFcheck}, $dini->{EFscale}, $dini->{EFmin}, $dini->{EFmax},
							sub {
								$ini->{EF} = $_[0];
							},

			"Wa",  \$ini->{Wa},
							$dini->{Wacheck}, $dini->{Wascale}, $dini->{Wamin}, $dini->{Wamax},
							sub {
								$ini->{Wa} = $_[0];
							},

			"BG",  \$ini->{BG},
							$dini->{BGcheck}, $dini->{BGscale}, $dini->{BGmin}, $dini->{BGmax},
							sub {
								$ini->{BG} = $_[0];
							},
			);

	for(my $i = 0 ; $i < $this->{ini}->{nStepBG} ; $i++) {
		my $ii = $i;
		$optimize->AddParameters(
			"EBG0$ii",  \$ini->{"EBG0$ii"},
							$dini->{"EBG0${ii}check"}, $dini->{"EBG0${ii}scale"}, $dini->{"EBG0${ii}min"}, $dini->{"EBG0${ii}max"},
							sub {
								$ini->{"EBG0$ii"} = $_[0];
							},

			"BGLeft$ii",  \$ini->{"BGLeft$ii"},
							$dini->{"BGLeft${ii}check"}, $dini->{"BGLeft${ii}scale"}, $dini->{"BGLeft${ii}min"}, $dini->{"BGLeft${ii}max"},
							sub {
								$ini->{"BGLeft$ii"} = $_[0];
							},

			"WBG$ii",  \$ini->{"WBG$ii"},
							$dini->{"WBG${ii}check"}, $dini->{"WBG${ii}scale"}, $dini->{"WBG${ii}min"}, $dini->{"WBG${ii}max"},
							sub {
								$ini->{"WBG$ii"} = $_[0];
							},
		);
	}

	$optimize->AddParameters(
			"ECBM",  \$ini->{ECBM},
							$dini->{ECBMcheck}, $dini->{ECBMscale}, $dini->{ECBMmin}, $dini->{ECBMmax},
							sub {
								$ini->{ECBM} = $_[0];
							},

			"D0CB",  \$ini->{D0CB},
							$dini->{D0CBcheck}, $dini->{D0CBscale}, $dini->{D0CBmin}, $dini->{D0CBmax},
							sub {
								$ini->{D0CB} = $_[0];
							},

			"EVBM",  \$ini->{EVBM},
							$dini->{EVBMcheck}, $dini->{EVBMscale}, $dini->{EVBMmin}, $dini->{EVBMmax},
							sub {
								$ini->{EVBM} = $_[0];
							},

			"D0VB",  \$ini->{D0VB},
							$dini->{D0VBcheck}, $dini->{D0VBscale}, $dini->{D0VBmin}, $dini->{D0VBmax},
							sub {
								$ini->{D0VB} = $_[0];
							},

			"Ecut",  \$ini->{Ecut},
							$dini->{Ecutcheck}, $dini->{Ecutscale}, $dini->{Ecutmin}, $dini->{Ecutmax},
							sub {
								$ini->{Ecut} = $_[0];
							},

			"K0Ecut",  \$ini->{K0Ecut},
							$dini->{K0Ecutcheck}, $dini->{K0Ecutscale}, $dini->{K0Ecutmin}, $dini->{K0Ecutmax},
							sub {
								$ini->{K0Ecut} = $_[0];
							},

			"BGcut",  \$ini->{BGcut},
							$dini->{BGcutcheck}, $dini->{BGcutscale}, $dini->{BGcutmin}, $dini->{BGcutmax},
							sub {
								$ini->{BGcut} = $_[0];
							},

			"C0Exp",  \$ini->{C0Exp},
							$dini->{C0Expcheck}, $dini->{C0Expscale}, $dini->{C0Expmin}, $dini->{C0Expmax},
							sub {
								$ini->{C0Exp} = $_[0];
							},

			"WExp",  \$ini->{WExp},
							$dini->{WExpcheck}, $dini->{WExpscale}, $dini->{WExpmin}, $dini->{WExpmax},
							sub {
								$ini->{WExp} = $_[0];
							},

			"BetaExp",  \$ini->{BetaExp},
							$dini->{BetaExpcheck}, $dini->{BetaExpscale}, $dini->{BetaExpmin}, $dini->{BetaExpmax},
							sub {
								$ini->{BetaExp} = $_[0];
							},
		);

	for(my $i = 0 ; $i < $this->{ini}->{nGL} ; $i++) {
		my $ii = $i;
		$optimize->AddParameters(
			"GLE0$ii",  \$ini->{"GLE0$ii"},
							$dini->{"GLE0${ii}check"}, $dini->{"GLE0${ii}scale"}, $dini->{"GLE0${ii}min"}, $dini->{"GLE0${ii}max"},
							sub {
								$ini->{"GLE0$ii"} = $_[0];
							},

			"GLC0$ii",  \$ini->{"GLC0$ii"},
							$dini->{"GLC0${ii}check"}, $dini->{"GLC0${ii}scale"}, $dini->{"GLC0${ii}min"}, $dini->{"GLC0${ii}max"},
							sub {
								$ini->{"GLC0$ii"} = $_[0];
							},

			"GLWL$ii",  \$ini->{"GLWL$ii"},
							$dini->{"GLWL${ii}check"}, $dini->{"GLWL${ii}scale"}, $dini->{"GLWL${ii}min"}, $dini->{"GLWL${ii}max"},
							sub {
								$ini->{"GLWL$ii"} = $_[0];
							},

			"GLGFraction$ii",  \$ini->{"GLGFraction$ii"},
							$dini->{"GLGFraction${ii}check"}, $dini->{"GLGFraction${ii}scale"}, $dini->{"GLGFraction${ii}min"}, $dini->{"GLGFraction${ii}max"},
							sub {
								$ini->{"GLGFraction$ii"} = $_[0];
							},

			"GLGWRatio$ii",  \$ini->{"GLGWRatio$ii"},
							$dini->{"GLGWRatio${ii}check"}, $dini->{"GLGWRatio${ii}scale"}, $dini->{"GLGWRatio${ii}min"}, $dini->{"GLGWRatio${ii}max"},
							sub {
								$ini->{"GLGWRatio$ii"} = $_[0];
							},
			);
	}
}

sub Recalc
{
	my ($this) = @_;
	return if(!defined $this->{DataFile});

	my $ini = $this->{ini};
#	$ini->{AppFunction} = $this->{ChooseAppFunctionListBox}->GetText();
	my $ConductionType = $this->{ini}->{ConductionType}; #$this->{ChooseConductionTypeListBox}->GetText();
	my $IsMetal = 0;
	$IsMetal = 1 if($ConductionType eq 'Metal');

	my $X1Label   = $this->{SampleFileFrame}->{X1ListBox}->GetText();
	my $Y1Label   = $this->{SampleFileFrame}->{Y1ListBox}->GetText();
	my $XMin      = $ini->{FitXMin};
	my $XMax      = $ini->{FitXMax};
	my $nSkipData = $ini->{nSkipData};
	my $pX        = $this->{DataFile}->GetData($X1Label) if($X1Label);
	my $pY1       = $this->{DataFile}->GetData($Y1Label) if($Y1Label);

	my (@X, @Y);
	my $c = 0;
	for(my $i = 0 ; $i < @$pX ; $i++) {
		my $x = $pX->[$i];
		next if($x < $XMin or $XMax < $x);
		next if($nSkipData > 0 and $i % $nSkipData != 0);
		$X[$c] = $x;
		$Y[$c] = $pY1->[$i];
		$c++;
	}
	$this->{pCalX} = \@X;
	my ($pY, $pCB, $pVB, $pCBFD, $pVBFD, $pGLArray, $pFD, $pBG) = PES::CalTotalDOSSpectrum(\@X, $this->{ini}, $IsMetal);
	$this->{pObsY}       = \@Y;
	$this->{pCalY}       = $pY;
	$this->{pCalCB}      = $pCB;
	$this->{pCalVB}      = $pVB;
	$this->{pCalCBFD}    = $pCBFD;
	$this->{pCalVBFD}    = $pVBFD;
	$this->{pCalGLArray} = $pGLArray;
	$this->{pCalFD}      = $pFD;
	$this->{pCalBG}      = $pBG;

	$this->RePlot();
}

sub Fit
{
	my ($this) = @_;
	return if(!defined $this->{DataFile});

	my $App    = $this->App();
	my $optics = new Optics;
	my $ini    = $this->{ini};
	$this->UpdateParameters();
	$this->BuildOptimize();

	my $Method = $this->mw()->{LSQFrame}->{LSQMethodListBox}->GetText(); #$this->{LSQMethodListBox}->GetText();
	my $optimize = $this->{Optimize};
print "Method: $Method\n";
print "nMaxIter: $ini->{nMaxIter}\n";

#	$this->{ini}->{AppFunction} = $this->{ChooseAppFunctionListBox}->GetText();
	my $ConductionType = $this->{ini}->{ConductionType}; #$this->{ChooseConductionTypeListBox}->GetText();
	my $IsMetal = 0;
	$IsMetal = 1 if($ConductionType eq 'Metal');

	my $X1Label   = $this->{SampleFileFrame}->{X1ListBox}->GetText();
	my $Y1Label   = $this->{SampleFileFrame}->{Y1ListBox}->GetText();
	my $XMin      = $ini->{FitXMin};
	my $XMax      = $ini->{FitXMax};
	my $nSkipData = $ini->{nSkipData};
	my $pX        = $this->{DataFile}->GetData($X1Label) if($X1Label);
	my $pY1       = $this->{DataFile}->GetData($Y1Label) if($Y1Label);

	my (@X, @Y);
	my $c = 0;
	for(my $i = 0 ; $i < @$pX ; $i++) {
		my $x = $pX->[$i];
		next if($x < $XMin or $XMax < $x);
		next if($nSkipData > 0 and $i % $nSkipData != 0);
		$X[$c] = $x;
		$Y[$c] = $pY1->[$i];
		$c++;
	}

#=========================================================
# 最適化の実行
#=========================================================
	$optimize->SetnS2Calculation(0);
	my ($OptVars, $MinVal) = $optimize->Optimize(
				$Method, undef, undef, undef,
				$ini->{EPS}, $ini->{nMaxIter}, $ini->{iPrintLevel},
				sub { $this->CalS2(\@X, \@Y, $IsMetal, @_); },
				undef,
				sub { Optimize::BuildDifferentialMatrixes(@_); },
				);
	print "\nOptimized at:\n";

	$optimize->RecoverParameters($OptVars);
	$optimize->PrintParameters(1, $OptVars, $MinVal, 1);

	$this->SetS2($MinVal);

	$this->UpdateParameters();
	$this->Recalc();
}

sub CalS2
{
	my ($this, $pX, $pY, $IsMetal, $pVars, $iPrintLevel) = @_;
#print "pVars=", join(',', @$pVars);

	my $optimize = $this->{Optimize};
	my $ini      = $this->{ini};
	$optimize->RecoverParameters($pVars);
	my ($pCalY) = PES::CalTotalDOSSpectrum($pX, $ini, $IsMetal);
	my $S2 = 0.0;
	my $c = 0;
	for(my $i = 0 ; $i < @$pX ; $i++) {
		my $x = $pX->[$i];
		my $d = $pCalY->[$i] - $pY->[$i];
		$S2 += $d * $d;
		$c++;
	}
	$S2 = sqrt($S2 / $c) if($c > 0);

	$optimize->IncrementnS2();
	my $nS2         = $optimize->nS2Calculation();
	my $nS2Interval = $ini->{nSaveSpectraInterval};
	print "S2[$nS2] = $S2 / ";
	$S2 += $optimize->CalPenalty(1.0e10, $pVars, 1);
	print "$S2\n";
	$optimize->PrintParameters(1, $pVars, $S2, 0);

	if($nS2Interval > 0 and $nS2 % $nS2Interval == 0) {
		$this->SetS2($S2);
		$this->Recalc();
		$this->RePlot();
	}
	$this->UpdateParameters();
	$this->mw()->update();

	return $S2;
}

sub Save
{
	my ($this) = @_;

	$this->Recalc() if(!defined $this->{pCalX});

	my $path = $this->{ini}->{ParameterFile};
	$path =  $this->{ini}->{SampleCSVFile} if(!$path);
	my $dir = Deps::ExtractDirectory($path);
	$path = Deps::MakePath($dir, "PES.csv", 0);
$this->print("\nSave decomposed spectra to [$path].\n");

	my $out = new JFile($path, "w");
	if(!$out) {
		$this->print("Error: Can not write to [$path].\n");
		return;
	}
	$out->print("E,PES(obs),PES(cal),CB(cal),VB(cal),CB*FD(cal),VB*FD(cal)");
	for(my $i = 0 ; $i < $this->{ini}->{nGL} ; $i++) {
		$out->print(",GL${i}(cal)");
	}
	$out->print(",FD(cal),BG(cal)\n");

	my $pE       = $this->{pCalX};
	my $pObs     = $this->{pObsY};
	my $pPES     = $this->{pCalY};
	my $pCB      = $this->{pCalCB};
	my $pVB      = $this->{pCalVB};
	my $pCBFD    = $this->{pCalCBFD};
	my $pVBFD    = $this->{pCalVBFD};
	my $pGLArray = $this->{pCalGLArray};
	my $pFD      = $this->{pCalFD};
	my $pBG      = $this->{pCalBG};
	for(my $i = 0 ; $i < @$pE ; $i++) {
		$out->print("$pE->[$i],$pObs->[$i],$pPES->[$i],$pCB->[$i],$pVB->[$i],$pCBFD->[$i],$pVBFD->[$i]");
		for(my $j = 0 ; $j < $this->{ini}->{nGL} ; $j++) {
			$out->print(",$pGLArray->[$j][$i]");
		}
		$out->print(",$pFD->[$i],$pBG->[$i]\n");
	}
	$out->Close();
}

sub SaveParameterFile
{
	my ($this, $Option, $filepath, $name, $Frame) = @_;
	$filepath = $Frame->{PathEntry}->GetText() if($filepath eq '');

	$this->{ini}->{SampleX1}       = $this->{SampleFileFrame}->{X1ListBox}->GetText();
	$this->{ini}->{SampleY1}       = $this->{SampleFileFrame}->{Y1ListBox}->GetText();
#	$this->{ini}->{AppFunction}    = $this->{ChooseAppFunctionListBox}->GetText();
#	$this->{ini}->{ConductionType} = $this->{ChooseConductionTypeListBox}->GetText();
	$this->{ini}->{YAxisPlotType}  = $this->mw()->{NoteBook}->{ViewRangePaneFrame}->{GraphFrame1YAxisListBox}->GetText();

	if(!defined $filepath or $filepath eq '') {
		$filepath = $this->{ini}->{Sample1CSVFile};
		$filepath = $this->{ini}->{SampleCSVFile} if(!defined $filepath or $filepath eq '');
		$filepath = $this->{ini}->{SubstrateCSVFile} if(!defined $filepath or $filepath eq '');
		$filepath = 'save.prm' if(!defined $filepath or $filepath eq '');
		$filepath =~ s/\.[^\.]+$/\.prm/i;
#		$filepath =~ s/\.csv$/\.prm/i;
		$filepath = Deps::ExtractFileName($filepath);

		$filepath = $this->ChooseSaveFile($filepath, '*.prm');
		if($filepath) {
			my $ext = Deps::ExtractExtention($filepath);
			if(!defined $ext or $ext eq '') {
				$filepath = Deps::ReplaceExtension($filepath, ".prm");
			}
			$this->{ini}->{ParameterFile} = $filepath;
		}
		else {
			return;
		}
	}
	$this->{ini}->SetIniFile($filepath, undef, 1);
	$this->App()->print("\nSaveParameterFile:\n");
	$this->ComposeParameters($this->{dini}, $this->{ini});
	$this->{ini}->WriteAll();
	$this->DecomposeParameters($this->{ini}, $this->{dini});
}

sub ReadParameterFile
{
	my ($this, $filepath) = @_;
	my $ini  = $this->{ini};
	my $dini = $this->{dini};

	$this->Initialize(1, 1);
	$this->App()->print("\nRead paramter from [$filepath].\n");

	$this->{ini}->ReadAll($filepath);
	$this->DecomposeParameters($ini, $dini);
	$this->RefreshMainPane($this->{EntryWidth});

	my $DataFrame = $this->{SampleFileFrame};
	$this->{ini}->{SampleX1} = $this->{ini}->{X}  if(!defined $this->{ini}->{SampleX1});
	$this->{ini}->{SampleY1} = $this->{ini}->{Y1} if(!defined $this->{ini}->{SampleY1});
	$DataFrame->{X1ListBox}->SetText($this->{ini}->{SampleX1}) if($this->{ini}->{SampleX1});
	$DataFrame->{Y1ListBox}->SetText($this->{ini}->{SampleY1}) if($this->{ini}->{SampleY1});

#	$this->{ChooseAppFunctionListBox}->SetText($this->{ini}->{AppFunction});
#	$this->{ChooseConductionTypeListBox}->SetText($this->{ini}->{ConductionType});

	if($this->{ini}->{SampleCSVFile}) {
		my $path = $this->{ini}->{SampleCSVFile};
		$path = $this->GetValidDataPath($path, $filepath, $this->{ini}->{ParameterFile});
		my $ret = $this->ReadSampleDataFile($path, 1, 0, 0);
		return undef unless($ret);
		$this->{ini}->{SampleCSVFile} = $path;
		$this->{ini}->{ParameterFile} = $filepath;

		if($this->{ini}->{FlipX}) {
			$this->FlipX(0);
			$this->{ini}->{FlipX} = 1;
		}
	}

	$this->RePlot(0, 1, 0, 0);

	$this->RefreshViewRangePane($this->{EntryWidth});

	my $YAxisListBox = $this->{ini}->{YAxisPlotType}; #$this->mw()->{NoteBook}->{ViewRangePaneFrame}->{GraphFrame1YAxisListBox};
	if($YAxisListBox) {
		$this->mw()->{NoteBook}->{ViewRangePaneFrame}->{GraphFrame1YAxisListBox}->SetText($this->{ini}->{YAxisPlotType}) if($this->{ini}->{YAxisPlotType});
	}

	$this->RePlot(1, 0, 1, 1);

	return 1;
}

sub ReadSampleDataFile
{
	my ($this, $filepath, $IsPrint, $UpdateRange, $IsPlot, $Frame) = @_;
	$UpdateRange = 1 if(!defined $UpdateRange);
	$IsPlot = 1 if(!defined $IsPlot);
	$Frame = $this->{SampleFileFrame} if(!defined $Frame);
	my $App = $this->App();
	my $pXDataLabel = $Frame->{pXDataLabel};
	my $pYDataLabel = $Frame->{pYDataLabel};
#print "type=$type\n";

	$this->Initialize(0, 1);
	my $pData = $this->{DataFile} = new Ellipsometry;

	$this->{Path} = $filepath;
	my ($nData, $pLabelArray, @pDataArray) = $pData->Read($filepath);
print "pDataArray[0],[1]=$pDataArray[0],$pDataArray[1]\n";
	if($filepath =~ /\.txt$/i) {
		if($pDataArray[0] =~ /ARRAY/) {
			my $p = $pDataArray[0];
			@pDataArray = @$p;
		}
	}
#	if($pDataArray[0] =~ /ARRAY/) {
#		my $p = $pDataArray[0];
#		@pDataArray = @$p;
#	}
#print "pL1=$pLabelArray->[0]  /  pL1=$pLabelArray->[1]\n";
#print "pD1=$pDataArray[0]  /  pD1=$pDataArray[1]\n";
#my $i =0;
#while(1) {
#	my $x = $pDataArray[0][$i];
#	last if(!defined $x);
#	my $y = $pDataArray[1][$i];
#print "$i: ($x, $y)\n";
#	$i++;
#}

	if(!defined $nData) {
		$App->print("Error: Can not read [$filepath].\n");
		return $this->{Path} = undef;
	}
	
	if(!Utils::IsConstantStepArray($pDataArray[0], 0.01)) {
		$App->print("Error: The data step for X is not constant.\n");
		return $this->{Path} = undef;
	}

	my $nDataArray = $this->{DataFile}->nDataArray();
	$Frame->{X1ListBox}->DeleteAllItem() if(defined $Frame->{X1ListBox});
	$Frame->{Y1ListBox}->DeleteAllItem() if(defined $Frame->{Y1ListBox});
	for(my $i = 0 ; $i < $nDataArray ; $i++) {
		$Frame->{X1ListBox}->AddItem($pLabelArray->[$i]) if(defined $Frame->{X1ListBox});
		$Frame->{Y1ListBox}->AddItem($pLabelArray->[$i]) if(defined $Frame->{Y1ListBox});
	}
	$Frame->{X1ListBox}->SetCurSel(@$pXDataLabel) if(defined $Frame->{X1ListBox});
	$Frame->{Y1ListBox}->SetCurSel(@$pYDataLabel) if(defined $Frame->{Y1ListBox});
	$pData->GetXData(@$pXDataLabel);
	$pData->GetYData(@$pYDataLabel);
	$pData->CalMinMax();
	($this->{ini}->{FitEmin}, $this->{ini}->{FitEmax}) = $pData->GetXMinMax() 
		if(!defined $this->{ini}->{FitEmin} or $this->{ini}->{FitEmin} eq '');

	if($UpdateRange or !defined $this->{ini}->{FitXMin}) {
		($this->{ini}->{FitXMin}, $this->{ini}->{FitXMax}) = Utils::CalMinMax($pDataArray[0]);
	}

	if($IsPlot) {
		$this->RePlot($UpdateRange);
	}
	else {
		$this->CreateGraphFrame() if(!$this->GetGraphFrameArray());
		$this->AssignGraphData();
	}

	return $filepath;
}

sub CreateGraphFrame
{
	my ($this, $canvas, $TargetData, $DoUpdate) = @_;
	return if(!$DoUpdate and $this->GetGraphFrameArray());

	$canvas = $this->Canvas();
	my $App = $this->App();
	my $font = $App->{GraphFrameFont};
	my @font = split(/,/, $font) if($font);
	my $w = $canvas->width();
	my $h = $canvas->height();

	my $RefreshGraphScaleFrame = (defined $this->{GraphFrameArray})? 0 : 1;

	my $GraphFrameArray = $this->{GraphFrameArray} = new GraphFrameArray($this->mw());
	$GraphFrameArray->SetCanvasSize($w, $h);

	$GraphFrameArray->AddGraphFrame();
	my $GraphFrame0  = $GraphFrameArray->GetGraphFrame(0);
	my $FramePosStr0 = $App->{GraphFrame0Position};
	$GraphFrame0->SetPositionByStr($FramePosStr0);

	my $XScale0 = $GraphFrame0->GetXScale(0);
	my $YScale0 = $GraphFrame0->GetYScale(0);
	$XScale0->SetScaleStringVisible(1);
	$XScale0->SetCaptionVisible(1);

	$GraphFrame0->SetViewRange(0, 0, 1, 1);

	if($RefreshGraphScaleFrame) {
		my $EntryWidth = $this->{EntryWidth};
		$this->RefreshViewRangePane($EntryWidth);
	}
}

sub AssignGraphData
{
	my ($this, $ResetViewRange) = @_;
	$ResetViewRange = 1 if(!defined $ResetViewRange);
	return if(!defined $this->{ini}->{SampleCSVFile});
	return if(!defined $this->mw()->{NoteBook}->{ViewRangePaneFrame}->{GraphFrame1YAxisListBox});

	my $GraphFrameArray = $this->GetGraphFrameArray();
	my $GraphFrame0  = $GraphFrameArray->GetGraphFrame(0);
	$GraphFrame0->ClearAllData();

	my $X1Label = $this->{SampleFileFrame}->{X1ListBox}->GetText();
	$X1Label = 'X' if(!$X1Label);
	my $Y1Label = $this->{SampleFileFrame}->{Y1ListBox}->GetText();
	$Y1Label = 'Y1' if(!$Y1Label);
	$GraphFrame0->SetXCaption($X1Label);
	$GraphFrame0->SetYCaption($Y1Label);

	my $pX    = $this->{DataFile}->GetData($X1Label) if($X1Label);
	my $pY1   = $this->{DataFile}->GetData($Y1Label) if($Y1Label);
	my $nData = $this->{DataFile}->nData();
	if($pX) {
		$GraphFrame0->AddGraphData($pX, $pY1,
				2, "black", "", 6, "red", 0, "red", "XAutoSkip", "Energy", "${Y1Label}") if($pY1);
	}

	my $pCalX = $this->{pCalX};
	my $pCalY = $this->{pCalY};
	my $pCB      = $this->{pCalCB};
	my $pVB      = $this->{pCalVB};
	my $pCBFD    = $this->{pCalCBFD};
	my $pVBFD    = $this->{pCalVBFD};
	my $pGLArray = $this->{pCalGLArray};
	my $pFD      = $this->{pCalFD};
	my $pBG      = $this->{pCalBG};
	if($pCalX) {
		$GraphFrame0->AddGraphData($pCalX, $pCalY,
				0, "", "circle", 3, "", 1, "red", "XAutoSkip", "Energy", "FT ${Y1Label}(real)") if($pCalY);
		$GraphFrame0->AddGraphData($pCalX, $pCB,
				1, "blue", "", 3, "", 1, "red", "XAutoSkip", "Energy", "CB(cal)") if($pCB);
		$GraphFrame0->AddGraphData($pCalX, $pVB,
				1, "blue", "", 3, "", 1, "red", "XAutoSkip", "Energy", "VB(cal)") if($pVB);
		$GraphFrame0->AddGraphData($pCalX, $pCBFD,
				1, "green", "", 3, "", 1, "red", "XAutoSkip", "Energy", "CB*FD(cal)") if($pCBFD);
		$GraphFrame0->AddGraphData($pCalX, $pVBFD,
				1, "green", "", 3, "", 1, "red", "XAutoSkip", "Energy", "VB*FD(cal)") if($pVBFD);
		for(my $i = 0 ; $i < $this->{ini}->{nGL} ; $i++) {
			$GraphFrame0->AddGraphData($pCalX, $pGLArray->[$i],
					1, "blue", "", 3, "", 1, "red", "XAutoSkip", "Energy", "GL${i}(cal)") if($pGLArray->[$i]);
		}
		$GraphFrame0->AddGraphData($pCalX, $pBG,
				1, "cyan", "", 3, "", 1, "red", "XAutoSkip", "Energy", "BG(cal)") if($pBG);
	}

	$GraphFrame0->SetXScalePlotType('x');
	$GraphFrame0->SetYScalePlotType('x');
	$this->SetViewRange($ResetViewRange);
}

sub Initialize
{
	my ($this, $InitializeParameterFile, $InitializeData) = @_;

	$this->{DataFile} = new Ellipsometry;

	if($InitializeParameterFile) {
		$this->{ini}->{SampleCSVFile} = '';
		$this->{ini}->{FlipX}         = 0;
		$this->{ini}->{FitXMin}       = '';
		$this->{ini}->{FitXMax}       = '';
	}
	if($InitializeData) {
		$this->{pCalX} = undef;
		$this->{pCalY} = undef;
	}
}

sub InitializeParameters
{
	my ($this, $ini, $dini) = @_;

	$this->AddParameters($ini, $dini, "EF",   0.0, 1,    1.0,  '', '');
	$this->AddParameters($ini, $dini, "T",  300.0, 0,   10.0, 0.0, '');
	$this->AddParameters($ini, $dini, "Wa",   0.1, 1,    0.2, 0.0, '');
	$this->AddParameters($ini, $dini, "BG",   0.0, 1, 1000.0, 0.0, '');
	for(my $i = 0 ; $i < $this->{ini}->{nStepBG} ; $i++) {
		$this->AddParameters($ini, $dini, "EBG0$i",   0.0, 0,    1.0, '', '');
		$this->AddParameters($ini, $dini, "BGLeft$i", 0.0, 0, 1000.0, 0.0, '');
		$this->AddParameters($ini, $dini, "WBG$i",    0.1, 0,    1.0, 0.0, '');
	}
	$this->AddParameters($ini, $dini, "ECBM",    0.0, 0,    1.0,  '', '');
	$this->AddParameters($ini, $dini, "D0CB",    0.0, 0, 1000.0, 0.0, '');
	$this->AddParameters($ini, $dini, "EVBM",   -3.0, 0,    1.0,  '', '');
	$this->AddParameters($ini, $dini, "D0VB",    0.0, 0, 1000.0, 0.0, '');
	$this->AddParameters($ini, $dini, "Ecut",    0.0, 0,    1.0,  '', '');
	$this->AddParameters($ini, $dini, "K0Ecut",  0.0, 0, 1000.0, 0.0, '');
	$this->AddParameters($ini, $dini, "BGcut",   0.0, 0, 1000.0, 0.0, '');
	$this->AddParameters($ini, $dini, "C0Exp",   0.0, 0, 1000.0, 0.0, '');
	$this->AddParameters($ini, $dini, "WExp",    1.0, 0,    1.0, 0.0, '');
	$this->AddParameters($ini, $dini, "BetaExp", 1.0, 0,    0.5, 0.0, '');
	for(my $i = 0 ; $i < $this->{ini}->{nGL} ; $i++) {
		$this->AddParameters($ini, $dini, "GLE0$i",        0.0, 0,    1.0,  '', '');
		$this->AddParameters($ini, $dini, "GLC0$i",        0.0, 0, 1000.0,  0.0, '');
		$this->AddParameters($ini, $dini, "GLWL$i",        0.3, 0,    0.1,  0.0, '');
		$this->AddParameters($ini, $dini, "GLGFraction$i", 1.0, 0,    0.1,  0.0, 1.0);
		$this->AddParameters($ini, $dini, "GLGWRatio$i",   1.0, 0,    0.1,  0.0, '');
	}
}

1;